Euglena-based neurocomputing with two-dimensional optical feedback on swimming cells in micro-aquariums

  • Ozasa, Kazunari
  • Lee, Jeesoo
  • Song, Simon
  • Hara, Masahiko
  • Maeda, Mizuo
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초록

We report on neurocomputing performed with real Euglena cells confined in micro-aquariums, on which two-dimensional optical feedback is applied using the Hopfield-Tank algorithm. Trace momentum, an index of swimming activity of Euglena cells, is used as the input/output signal for neurons in the neurocomputation. Feedback as blue-light illumination results in temporal changes in trace momentum according to the photophobic reactions of Euglena. Combinatorial optimization for a four-city traveling salesman problem is achieved with a high occupation ratio of the best solutions. Two characteristics of Euglena-based neurocomputing desirable for combinatorial optimization are elucidated: (1) attaining one of the best solutions to the problem, and (2) searching for a number of solutions via dynamic transition between the best solutions. Mechanisms responsible for the two characteristics are analyzed in terms of network energy, photoreaction ratio, and dynamics/statistics of Euglena movements. The spontaneous fluctuation in input/output signals and reduction in photoreaction ratio were found to be key factors in producing characteristic (1), while the photo-insensitive Euglena cells or the accidental evacuation of cells from non-illuminated areas causes characteristic (2). Furthermore, we show that the photophobic reactions of Euglena involves various survival strategies such as adaptation to blue-light or awakening from dormancy, which can extend the performance of Euglena-based neurocomputing toward deadlock avoidance or program-less adaptation. Finally, two approaches for achieving a high-speed Euglena-inspired Si-based computation are described.

키워드

Natural computingSoft computingBiocomputingMicrobe-based neurocomputingNeural network algorithmTraveling salesman problem (TSP)Euglena gracilisMicro-aquariumMicrofluidic deviceOptical feedbackPhototaxisFlagellate microbial cellsNoise oscillatorPHOTOPHOBIC REACTIONSBACTERIALTRANSDUCTIONCHEMOTAXISPHOTOTAXISSIMULATIONGRACILISPH
제목
Euglena-based neurocomputing with two-dimensional optical feedback on swimming cells in micro-aquariums
저자
Ozasa, KazunariLee, JeesooSong, SimonHara, MasahikoMaeda, Mizuo
DOI
10.1016/j.asoc.2012.09.008
발행일
2013-01
유형
Article
저널명
Applied Soft Computing Journal
13
1
페이지
527 ~ 538